Interfaculty Bioinformatics Unit

ChIP-seq

We use data from ChiP-seq experiments to study histone modificiations or identify binding sites of DNA-binding proteins such as transcription factors. Our workflow relies on the nf-core chipseq pipeline. 

 

  • Documentation (download below)
  • Materials & methods
  • Quality report

Differential binding (DB) analysis

  • Table with DB results for each pairwise comparison of experimental groups
  • Table with gene annotation for the peaks
  • Figure showing peak overlap between samples

 

A zip archive containing the results from an example analysis can be downloaded below. Please refer to the included README and the documentation for more details.