Analysis of metagenomics data

We use whole genome sequencing data from metagenomics samples for taxonomic and functional profiling, for example of gut microbiota. The analysis relies on tools developed by the Huttenhower Lab at Harvard and includes the following steps:

  • Documentation (download below)
  • Materials + methods
  • Summary statistics

 

Taxonomic profiling

  • Taxonomic composition
  • Association test results
  • Visualisations

Functional profiling

  • Pathway abundances
  • Assocation test results

 

A zip archive containing the results from an example analysis can be downloaded below. Please refer to the included README and the documentation for more details.